A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessi...
| Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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| Tipo de recurso: | artículo |
| Estado: | Versión aceptada para publicación |
| Fecha de publicación: | 2019 |
| País: | España |
| Institución: | Consejo Superior de Investigaciones Científicas (CSIC) |
| Repositorio: | DIGITAL.CSIC. Repositorio Institucional del CSIC |
| OAI Identifier: | oai:digital.csic.es:10261/207002 |
| Acceso en línea: | http://hdl.handle.net/10261/207002 |
| Access Level: | acceso abierto |
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oai:digital.csic.es:10261/207002 |
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A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits Zhao, Guangwei Lian, Qun Zhang, Zhonghua Fu, Qiushi He, Yuhua Ma, Shuangwu Ruggieri, Valentino Monforte, Antonio J. Wang, Pingyong Julca, Irene Wang, Huaisong Liu, Junpu Xu, Yong Wang, Runze Ji, Jiabing Xu, Zhihong Kong, Weihu Zhong, Yang Shang, Jianli Pereira, Lara Argyris, Jason Zhang, Jian Mayobre, Carlos Pujol, Marta Oren, Elad Ou, Diandian Wang, Jiming Sun, Dexi Zhao, Shengjie Zhu, Yingchun Li, Na Katzir, Nurit Gur, Amit Dogimont, Catherine Schaefer, Hanno Fan, Wei Bendahmane, Abdelhafid Fei, Zhangjun Pitrat, Michel Gabaldón, Toni Lin, Tao García-Mas, Jordi Xu, Yongyang Huang, Sanwen Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. Our results suggest that three independent domestication events occurred in melon, two in India and one in Africa. We detected two independent sets of domestication sweeps, resulting in diverse characteristics of the two subspecies melo and agrestis during melon breeding. Genome-wide association studies for 16 agronomic traits identified 208 loci significantly associated with fruit mass, quality and morphological characters. This study sheds light on the domestication history of melon and provides a valuable resource for genomics-assisted breeding of this important crop. This work was supported by funding from the Agricultural Science and Technology Innovation Program (to Yongyang Xu, S.H., Z.Z. and H.W.), the China Agriculture Research System (CARS-25 to Yongyang Xu and H.W.), the Leading Talents of Guangdong Province Program (00201515 to S.H.), the Shenzhen Municipal (The Peacock Plan KQTD2016113010482651 to S.H.), the Dapeng district government, National Natural Science Foundation of China (31772304 to Z.Z.), the Science and Technology Program of Guangdong (2018B020202007 to S.H.), the National Natural Science Foundation of China (31530066 to S.H.), the National Key R&D Program of China (2016YFD0101007 to S.H.), USDA National Institute of Food and Agriculture Specialty Crop Research Initiative (2015-51181-24285 to Z.F.), the European Research Council (ERC-SEXYPARTH to A.B.), the Spanish Ministry of Economy and Competitiveness (AGL2015–64625-C2-1-R to J.G.-M.), Severo Ochoa Programme for Centres of Excellence in R&D 2016–2010 (SEV-2015–0533 to J.G.-M.), the CERCA Programme/Generalitat de Catalunya to J.G.-M. and the German Science Foundation (SPP1991 Taxon-OMICS to H.S.). Springer Nature http://hdl.handle.net/10261/207002 |
| title |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| spellingShingle |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits Zhao, Guangwei |
| title_short |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_full |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_fullStr |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_full_unstemmed |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| title_sort |
A comprehensive genome variation map of melon identifies multiple domestication events and loci influencing agronomic traits |
| author |
Zhao, Guangwei |
| author_facet |
Zhao, Guangwei Lian, Qun Zhang, Zhonghua Fu, Qiushi He, Yuhua Ma, Shuangwu Ruggieri, Valentino Monforte, Antonio J. Wang, Pingyong Julca, Irene Wang, Huaisong Liu, Junpu Xu, Yong Wang, Runze Ji, Jiabing Xu, Zhihong Kong, Weihu Zhong, Yang Shang, Jianli Pereira, Lara Argyris, Jason Zhang, Jian Mayobre, Carlos Pujol, Marta Oren, Elad Ou, Diandian Wang, Jiming Sun, Dexi Zhao, Shengjie Zhu, Yingchun Li, Na Katzir, Nurit Gur, Amit Dogimont, Catherine Schaefer, Hanno Fan, Wei Bendahmane, Abdelhafid Fei, Zhangjun Pitrat, Michel Gabaldón, Toni Lin, Tao García-Mas, Jordi Xu, Yongyang Huang, Sanwen |
| author_role |
author |
| author2 |
Lian, Qun Zhang, Zhonghua Fu, Qiushi He, Yuhua Ma, Shuangwu Ruggieri, Valentino Monforte, Antonio J. Wang, Pingyong Julca, Irene Wang, Huaisong Liu, Junpu Xu, Yong Wang, Runze Ji, Jiabing Xu, Zhihong Kong, Weihu Zhong, Yang Shang, Jianli Pereira, Lara Argyris, Jason Zhang, Jian Mayobre, Carlos Pujol, Marta Oren, Elad Ou, Diandian Wang, Jiming Sun, Dexi Zhao, Shengjie Zhu, Yingchun Li, Na Katzir, Nurit Gur, Amit Dogimont, Catherine Schaefer, Hanno Fan, Wei Bendahmane, Abdelhafid Fei, Zhangjun Pitrat, Michel Gabaldón, Toni Lin, Tao García-Mas, Jordi Xu, Yongyang Huang, Sanwen |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| description |
Melon is an economically important fruit crop that has been cultivated for thousands of years; however, the genetic basis and history of its domestication still remain largely unknown. Here we report a comprehensive map of the genomic variation in melon derived from the resequencing of 1,175 accessions, which represent the global diversity of the species. Our results suggest that three independent domestication events occurred in melon, two in India and one in Africa. We detected two independent sets of domestication sweeps, resulting in diverse characteristics of the two subspecies melo and agrestis during melon breeding. Genome-wide association studies for 16 agronomic traits identified 208 loci significantly associated with fruit mass, quality and morphological characters. This study sheds light on the domestication history of melon and provides a valuable resource for genomics-assisted breeding of this important crop. |
| publishDate |
2019 |
| format |
article |
| status_str |
acceptedVersion |
| url |
http://hdl.handle.net/10261/207002 |
| eu_rights_str_mv |
openAccess |
| publisher |
Springer Nature |
| institution |
Consejo Superior de Investigaciones Científicas (CSIC) |
| collection |
DIGITAL.CSIC. Repositorio Institucional del CSIC |
| reponame_str |
DIGITAL.CSIC. Repositorio Institucional del CSIC |
| instname_str |
Consejo Superior de Investigaciones Científicas (CSIC) |
| _version_ |
1878437759251644416 |
| publishDateSort |
2019 |
| author_browse |
Argyris, Jason Bendahmane, Abdelhafid Dogimont, Catherine Fan, Wei Fei, Zhangjun Fu, Qiushi Gabaldón, Toni García-Mas, Jordi Gur, Amit He, Yuhua Huang, Sanwen Ji, Jiabing Julca, Irene Katzir, Nurit Kong, Weihu Li, Na Lian, Qun Lin, Tao Liu, Junpu Ma, Shuangwu Mayobre, Carlos Monforte, Antonio J. Oren, Elad Ou, Diandian Pereira, Lara Pitrat, Michel Pujol, Marta Ruggieri, Valentino Schaefer, Hanno Shang, Jianli Sun, Dexi Wang, Huaisong Wang, Jiming Wang, Pingyong Wang, Runze Xu, Yong Xu, Yongyang Xu, Zhihong Zhang, Jian Zhang, Zhonghua Zhao, Guangwei Zhao, Shengjie Zhong, Yang Zhu, Yingchun |
| publisherStr |
Springer Nature |
| score |
6,9303427 |